Resources

Frictionless Data (FD) Tutorials and Documentation

• The FD Guide has tutorials and documentation for using FD tools and software
• FD forum for asking long questions
• FD Discord chat for asking short questions to the community
• FD Github repositories. Note: check out the README in each individual repository for documentation on how to use that software
  • Fellows website repository
  • datapackage-py repository
  • datapackage-r repository
  • goodtables-py repository

Frictionless Data Workshops

Slides:

• Template slides for Fellows to use as a starting place (if you want)
• Frictionless Data intro slides
• FD for Reproducible Research slides - note: you don't need to do the tutorial in here
• FD in the lab slides

Note: these slides are all openly licensed, so they can be remixed/reused

Videos:

• Data package creator walk through video
• Goodtables command line walk through video
• Goodtables continuous validation walk through video

Frictionless Data + Reproducible Research blogs and articles

• FAIR research
• eLife + FD case study
• Pacific Northwest National Laboratory case study
• Cell Migration Standardization Organization case study
• University of Cambridge retinal mosaics case study
• Tesera natural resources case study
• See more case studies here
• The Open Definition

Contributing Best Practices

• Open Knowledge Foundation coding standards
• Open Knowledge Foundation code of conduct

Data Management Best Practices

• Data Management Plans DMP Tools
• NIH data sharing guidelines
• Understanding JSON Schemas by json-schema.org
• Data Curation Centre: How to License Research Data
• Open Source Initiative's guide to licenses
• Open Life Science's video lesson about open licensing featuring Josh Simmons
• What is a data dictionary article by UCMerced Library
• BITSS Berkeley Initiative for Transparency in the Social Sciences Resources

Reproducible Research & Open Science Readings

• The Turing Way: a lightly opinionated guide to reproducible data science
• eLife Innovation Community Manager Emmy Tsang's talk on reproducible research
• eLife Labs Reproducible Document Stack blog
• Reproducible Computational Workflows with Continuous Analysis, Brett K. Beaulieu-Jones & Casey S. Greene. bioRxiv 056473
• The Center for Open Science
• Do you speak open science? Resources and tips to learn the language, Masuzzo and Martens, 2017
• Open Science MOOC
• Minda lab's open science best practices blog for a computational psychology lab
• The Royal Society Moving towards transparent and reproducible research
• ASAPbio preprint info centre
• OHBM Open Science - Towards Global Inclusivity in Open Science Video
• Open Science Glossary by the Open Science Training Handbook
• Open science, communal culture, and women's participation in the movement to improve science by the Murphy Et al., 2020 in PNAS
• PLOS What is Open Peer Review?
• #bropenscience is broken science, Whitaker and Guest 2020
• 10 Things to Know About Reproducibility and Replicability
• Challenges in irreproducible research, Nature
• Is Reproducible Research Accurate? | John Ioannidis | Talks at Google
• Data Science - 5.1.2 - What is Reproducible Research About, BobTrenwith
• What does research reproducibility mean? (Goodman et al, 2016, Science Translational Medicine)

Coding Resources

• Markdown tutorial & resources by Ted Laderas
• GitHub Hello World introductory tutorial
• Git-it, an interactive Git & GitHub learning app by Jessica Lord
• Git tutorial by Jenny Bryan, focused on Git and R/Rstudio
• Command Line cheatsheet by April Speight, and some educational and entertaining command line tutorial videos
• Common Python errors flow chart & article from Python For Biologists
• Vaidehi Joshi's BaseCS tutorials for beginner computer science concepts
• Coding resources for environmental scientists from Openscapes